NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208202_1003261

Scaffold Ga0208202_1003261


Overview

Basic Information
Taxon OID3300020514 Open in IMG/M
Scaffold IDGa0208202_1003261 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2638
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000865Metagenome / Metatranscriptome855Y
F004443Metagenome / Metatranscriptome437Y

Sequences

Protein IDFamilyRBSSequence
Ga0208202_10032612F000865N/AMTKIDEAKIIARDDEVKAIEKTVEEFRASKEKQIDKGIETKALITLPHPSATISYIPILTFTSFIGIFNIFISIFSSLVADLFDRHFQTFTIGDLSDCKLRHLSRQTASTQADTVVKTLANPDSIRPFKIPGTWPDVHYKSRSRNPLVPSHLLSGRVRKSETKFHSNSFIFNYLDPSR
Ga0208202_10032613F004443N/AQRWRRNTGSGNNDSPTATAAPKTETAAEWFLQNLASSLFPFTGFTSIGAALHLATGLRRSKRAPSVYPFEITDLLDYEARKKHSQNKILGEKIAKILHQNTDFSDEIAANSQTPSEKLKKDPIMALVTKTISTYMLVKHSKNAKELYKEENLSPWGEPFFKKKE
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