| Basic Information | |
|---|---|
| Taxon OID | 3300020513 Open in IMG/M |
| Scaffold ID | Ga0208090_1000488 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7127 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (89.47%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000980 | Metagenome / Metatranscriptome | 814 | Y |
| F001019 | Metagenome / Metatranscriptome | 804 | Y |
| F001460 | Metagenome / Metatranscriptome | 690 | Y |
| F001781 | Metagenome / Metatranscriptome | 635 | Y |
| F002387 | Metagenome / Metatranscriptome | 565 | Y |
| F007468 | Metagenome / Metatranscriptome | 350 | Y |
| F024786 | Metagenome / Metatranscriptome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208090_100048810 | F000450 | GGCGG | MGDRANFGFVQPNGNTIVLYGHWAGNQMLARLAEAVFKARPRWNDPSYATRITISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFSQQTFSLHEEAPRNDLDNKVNGMSNEALFTMDLSNFVEKYADVTISV |
| Ga0208090_100048812 | F002387 | GAGG | MSDPHGIIGYYRKGGGIMASFLEDVNQMVIDAVYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIYDEFNKFYNLKEGDEDYLC |
| Ga0208090_100048813 | F001460 | GAGG | MLGYTESDLNRMINAVHDAKLFYLRYPSDLMDKTELRNDLEMAVSFMQGLWAEGYFDHTN |
| Ga0208090_100048814 | F007468 | GGAGG | LTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYNNDNI |
| Ga0208090_100048816 | F001781 | GGAG | MKPEDKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGHGFSLEYGAEQHNDDVLEWMLNREYIVDSMFEEEEEDEDATD |
| Ga0208090_100048817 | F000441 | AGGAGG | MQQTDKYINEQLSKAQALLWSGSLHEQDEAHNIIAKLINDRMGKAEGQND |
| Ga0208090_100048818 | F001019 | GAGG | MTNYEPSLEILEVNYSCSPGGVDTFEVYDRLDDDTMSIPIYETESLTEAVQYCYNLGKDFIVRTYAEWEMRELLANI |
| Ga0208090_100048819 | F024786 | GAGG | LPTYRIFGTKYINYYTVLDAADEYEAVDLANSLPETAWNLVESDDVIEATDIYLNEDTSIDLQLNI |
| Ga0208090_10004886 | F000980 | N/A | LLFVSGTRYNTRMTNELVSSKYTFACDPDECDCLIELTSSDGFGFPSGVMEITCPCGRKPTLLSVEHATIQPTETEGNKMEESTVTISPIPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKTNGVLQGKIDAVKEIICEAYADSQDQDTLRDIAEALGIELIKEVQFTASVEVSGTYSYDILSDYSDYDLDSVITDALFADSNDGNVQVDDTEVCNVREA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |