| Basic Information | |
|---|---|
| Taxon OID | 3300020507 Open in IMG/M |
| Scaffold ID | Ga0208697_1001372 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3826 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012769 | Metagenome / Metatranscriptome | 277 | N |
| F013275 | Metagenome / Metatranscriptome | 272 | N |
| F014232 | Metagenome / Metatranscriptome | 264 | N |
| F023279 | Metagenome / Metatranscriptome | 210 | N |
| F028152 | Metagenome / Metatranscriptome | 192 | N |
| F054590 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208697_10013722 | F023279 | GAG | MADSSKENTEAIIDTIKSELAIGFKNCIDKIDTEKKVVDRHNWEIYVKINKILHNSRRLDPQWAIEGDIGSSWSLRSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTNNPGWSINKTRRSSPILLTPTQIGLQEENIS |
| Ga0208697_10013725 | F013275 | N/A | MEIIGMDDFINPYKDVKLKTHLLWMTLSTIANYSSAGNISSKYVRAYLAIMVWLLVTFNSDRSGAQRLIMAFLYLEFNSIDRIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAAAEYIPYQWEIETLIPRAIKYFKIK |
| Ga0208697_10013726 | F054590 | N/A | MIENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWMI |
| Ga0208697_10013727 | F028152 | N/A | MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRAVLVLQPSPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSAQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKERINFGVTEVRKTSPYEYKDPREVNFKIPKIKDEIKVVTRVRNPTYLDFLYRPPIN |
| Ga0208697_10013728 | F014232 | N/A | MSQEKSEINNKVITKEDTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLVNGLISYKPLERIWNSKKVIRKTDPGWILADKVTLLEHQVLNQIDTIDISVPWDDVENKSRYLDLYKTIIKLKAIHPNWEMYLEDSKNHHFCKCLQCSEVKRRYQEMLDATSSEESNSE |
| Ga0208697_10013729 | F012769 | N/A | MQFQYPKFKVRELVKDKFDPILKEEYQEETAMKVFKASIEVIRQSGNRLTEQHYLPYSPEEKEAVIKEVIAQISEWKNRILNRRQKEKITRIDRALSKRILDILAEYLRALEETDIAKRQSKLYHVDAVAAITELQISRKFASPERKPVKRKIH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |