NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10200379

Scaffold Ga0211585_10200379


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10200379 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1261
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034603Metagenome174Y
F078839Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211585_102003792F034603N/AVDGKKLMRSFKGYLQERAPAWTESLSTALFDLTRTTYMIPLSPSILKRIWPKLPRTTVFHLTDLVGVQHLKKMQGGKRSISAFWNITARAIDDGIRTDGGYVVELEGDILAAGPDDIMSQPDKTGRRWLTLSTLLDPVDQHGMGGGVKLKRMESDIEEMMIEIIMQYADDPIHMPNVKNSWIALGKEYGSRSPEDNKIKGQIIGDYINGMESVMKKHSKQLKSVLLDYSKKKIQEPDEDSGDTPEWDEVVVNNFKIQKIHVTPEFSPDFAEDDDIYGFPFELYYETEEMVDYINRKVQPIKI
Ga0211585_102003793F078839AGGMKEERLISSIVMITFLALWFIVLFTFGLLVYQTSSYQNQVDDLIKENAKITTLWMEKN
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