NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10003258

Scaffold Ga0211585_10003258


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10003258 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18718
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F011890Metagenome286Y
F012068Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0211585_1000325811F011890AGGAGMKKIIIVLLTLFFTTVSYATSDNPGSNSGGSSSTITIINSGKAGGSFNARTQMYKDGLIEQGYNVVFLNIGKISQAVKMFKETAEPTIMVYATNQVYKQNLFHTEENFIMLEYQQPLYICRTNTSKDKTVGLTVAHGKGYDPKLLTSLLGNDITLVPYKNSGAMLKGILGGDVDMMVNNQGKSFKYMASGEGTCEPSDKLPTMEATVIGINIDVQGIREVIYNISISGPFAEYHTSRKLHRPTGSWQDELALAQSGEKGYLIKK
Ga0211585_1000325813F012068N/AMNILAKMFEPSKDRLISNAKKMMDNAQDPWFKQYWQKVYVHLCRQYKKLH
Ga0211585_1000325819F011254N/AMLVDIITKKPVKIKKTTSLDKWSSESLWPIEIDDNWYKITIPGERSNIIDIKVGNESIKHCLNAGLNTENGYEIWLHGNLSQYFSRISECIAQDDLLRFKNLESKYLHTVSWNEKIEGDFIPTHVKRFFANGEGPFWYSKSDFHNLPYVEYNGKDIDTDVNLDEDLQYVDNKFYGNGQCKSLKQLPVLPTIKTEQIKNTKLKETMQQFGFTDILQIQYVELQPNSVIPVHRDDFTYEDGKHIIDGPTQLYCVLSGNTEDIKFKFKNAGLIDVSKPIFINNHRFVHSLVYTGDKPRGVLLAYGIRSFTSSH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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