| Basic Information | |
|---|---|
| Taxon OID | 3300020475 Open in IMG/M |
| Scaffold ID | Ga0211541_10324860 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 752 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_152 | |||||||
| Coordinates | Lat. (o) | 43.7738 | Long. (o) | -16.9097 | Alt. (m) | Depth (m) | 5 to 160 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030557 | Metagenome | 185 | N |
| F052887 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211541_103248601 | F030557 | N/A | LTDPNIINAALTDKEFRIYHYCCSNYNVQKRSAYIRIVDIAGLFQLTKKEVEELLIKLSQIKVNDLPLISMKQEKYISFDMPSHKKFIESLGFKKYSNQGFRTLNGHFKQIKDAEKVKLKTYLYPTLDQYELLEKLEDLPTEELNKIKKEQLQYPWILRNVIKNRP |
| Ga0211541_103248602 | F052887 | GGA | MSSKIDHSINQYLFVRSNIINILADAAIAERFIRAPSNKRCPSMYQILETYYDKKDWGYHAEPKLRLRGTPKQMQNYDTAIDLLLMIDTDI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |