NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211579_10004864

Scaffold Ga0211579_10004864


Overview

Basic Information
Taxon OID3300020472 Open in IMG/M
Scaffold IDGa0211579_10004864 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9632
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.4813Long. (o)-159.088Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001740Metagenome / Metatranscriptome643Y
F032680Metagenome / Metatranscriptome179Y
F096221Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0211579_1000486415F032680N/AMSKYVERIMDEVYDNFRNHFDDKDEKIWFLEELIRELQDELEDIKYQDFGGTITDDFR
Ga0211579_1000486418F096221N/AMKKKLKYICPECKAMYEGPQGATPFIVSWNDGHFCTPRLVGEEEVKDLSKKTKSLKEDEIWTTYYN
Ga0211579_100048649F001740N/AMYNPNNPSNWSWQKAFDEVEKTVNQAELTQQSINHVLNYPGEANGVFMTLSKNQQDDVYEILGNIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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