| Basic Information | |
|---|---|
| Taxon OID | 3300020469 Open in IMG/M |
| Scaffold ID | Ga0211577_10377885 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 880 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_133 | |||||||
| Coordinates | Lat. (o) | 35.4068 | Long. (o) | -127.7432 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F000896 | Metagenome / Metatranscriptome | 845 | Y |
| F019731 | Metagenome / Metatranscriptome | 228 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211577_103778851 | F000896 | AGGAG | MTNKINLVINLSILALLIYLSVSVKTLQDKVFPDPNIMIPMTGSFDQTDEMSYNIQKFLNTILKQAINEMEQ |
| Ga0211577_103778852 | F019731 | GGAG | MDDLDNILTNIDLEEDKLETEEKDWYCGDCEHGPMMDDDTNCSRCGAKHGVQHKEEMTGWEDEDIEAEVEEIW |
| Ga0211577_103778853 | F000302 | GGAGG | MVAVMSQDTKERIAEMERQKIDLENQLEFLGYSGNLVRMHQIEEEIYEIEDTIRKLLP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |