| Basic Information | |
|---|---|
| Taxon OID | 3300020469 Open in IMG/M |
| Scaffold ID | Ga0211577_10003737 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13613 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (68.97%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_133 | |||||||
| Coordinates | Lat. (o) | 35.4068 | Long. (o) | -127.7432 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F031061 | Metagenome / Metatranscriptome | 183 | N |
| F046235 | Metagenome / Metatranscriptome | 151 | N |
| F071268 | Metagenome / Metatranscriptome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211577_1000373716 | F031061 | GAGG | MKQSQYNDLLTKLEEVLSVLPNTIPIVDKDLMEEQILDKQYQLEYDGASHGGSQKLYEHFLEHRDLKWIWCHSGNRYGVNPKELYEQAPYRCPVFGTLLDYGLGKNTSTNHPAFRPSMDHIEQQSRGGVKRDDINNFEIMSVQANTYRNNATTMHQLYLLKYELTKL |
| Ga0211577_1000373717 | F071268 | GAGG | MRNYHEDLLDEFGDDLERIFGPTEERTKGLTSLAGQPDGDLKTLLKGLKTKVIDCSGFMPKRQPFLNVVKEVLRVMRDSVDSTTGKSIFYGYNLPVFVEQERVQGADEFAWEDVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSRALVGAGVCPATYIISDSKSDNANQFGARNISNKTTEWFDDYKVRVYRAQEMEKDGFPAKAGDAPYLNMFNELAEFEAFAIATQGTSKSAGSCNRADKLFEYRGQYGEDIFKRAIRTVRTAWGNGELCHATVWGIATLMWYYKKNYNFASGEMRKLETELVNAIQAYYPDKASTPNRASGKDALWPQVRKLIGKTYPKDADDFRGRQESFPFMIASALRSMILNYDYYRTHPEGLSSKSLLKLDLPAIERTNGSTIEYTINHVLIQDNRIWDRLDVEEYNQQDFDDADFAFEDEDEAVTV |
| Ga0211577_1000373722 | F046235 | N/A | MTELVHYDWTTLIDEESKKLMCDDINNVIAEGHFWKNSPPYQTNINIFGLPHEHWNNLKMSFIWSCFAYLGREAQIKSIKSWGYKTNLTTQENRDTYWHQHIREASTTISGVFYLNKPSEDDDVSTLGTEIAPNGVEGEGKYFAEMRVGNWIIFPGKTWHRPGILTSNNYRYIVAADMEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |