NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211640_10044873

Scaffold Ga0211640_10044873


Overview

Basic Information
Taxon OID3300020465 Open in IMG/M
Scaffold IDGa0211640_10044873 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2612
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9687Long. (o)-100.7324Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F003326Metagenome / Metatranscriptome494Y

Sequences

Protein IDFamilyRBSSequence
Ga0211640_100448735F003326AGGMATIEQKKKLIKTIKNPIRYFRLNFSRYGGEVAMGTITKDQYDYWSDNDGFEEYMGLVDSDPENANKEIPKRAQFDQPFYEYNNICHMNGPEWADSQTMYIEELDKNGQSLEDDDGGYIQDIQHDFGDLESLGAEVVCDEEHHASSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGIEIDKLKIRYSNADGFQVFNEIEYDGEVYYLEEDSTGKSSSFYVNRGEKLDG
Ga0211640_100448737F000681AGGAGMYKRDDHYYSVISTEDLYKELNTNYTGETDLVQSLMSQAISEGLVATRHELGVANEELWSLNDWPEGEGFGTSDFYSYRKRIAETIARERKFLQAENELVQINKLTESPKNDTVHQYMKINEKLKEGLVA
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