| Basic Information | |
|---|---|
| Taxon OID | 3300020462 Open in IMG/M |
| Scaffold ID | Ga0211546_10056118 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1923 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_151 | |||||||
| Coordinates | Lat. (o) | 36.2108 | Long. (o) | -28.7989 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012114 | Metagenome | 283 | Y |
| F019646 | Metagenome | 228 | Y |
| F053980 | Metagenome | 140 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211546_100561181 | F019646 | N/A | LRKVFTMSNNFEIHYTSDCCGAYVHSDAELCPTCLEHCEVIEDRVDYECSEAVHFESSLDFYGAG |
| Ga0211546_100561182 | F012114 | GGAG | MSNNNCMMPKVRKNVWVVYDTQGNRIGEVGAMTEIEARQKVAEHVMIPFRLSHVEE |
| Ga0211546_100561186 | F053980 | AGGAG | MNGYELLAQFEKEIKECFTVPNDWLPEEFQDQRTDSVSLADIERKCDARDKCTLSNFEEDSIERAKRVQAYRSQLEQTGEIEYIPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |