NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211559_10010354

Scaffold Ga0211559_10010354


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10010354 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4851
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F019643Metagenome / Metatranscriptome228Y
F052546Metagenome142Y
F065685Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_100103543F000325AGGAGMKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLVNAEKKGNDLRWHERGDFYKNGSELDNEYVDNIIWACESILAEGGKLPKMWAYTHIYDTRLSMELGKYITMYASIHNEDDWAVAKAAGFKLFAWCDSGENIAPKRPRGKKKADEWRSSLPKMKIIGQEKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGLANVLFPSH
Ga0211559_100103545F019643GGAGGMTKYYIKTGTLEIIFSTELEPYDACRRVIHECNSNDEVDEYMYVDERGYRDYTTADPSTFVVETEDILRKEGYLK
Ga0211559_100103546F065685AGGAGGMKPTVGIGSNTKFGRVLKILRDGVVVEDGQGRKETVSFRRIENSLKGNSK
Ga0211559_100103548F052546N/AMNNCITKRIVRLTPMIILSKFYNTAAILILVYTSLYSGCAIVPNRNTITLNKTIELDERAIEKMNVGIRLEWIR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.