| Basic Information | |
|---|---|
| Taxon OID | 3300020442 Open in IMG/M |
| Scaffold ID | Ga0211559_10000060 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 58084 |
| Total Scaffold Genes | 95 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 79 (83.16%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_140 | |||||||
| Coordinates | Lat. (o) | 7.416 | Long. (o) | 79.3102 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010086 | Metagenome | 308 | Y |
| F054081 | Metagenome / Metatranscriptome | 140 | Y |
| F056435 | Metagenome / Metatranscriptome | 137 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211559_1000006010 | F054081 | N/A | MKYTTITYVGRSGGGFFARVGKTVYEFEWQKGVGIGNRADEIRPEHVKKIAKWRDKKGKRIFVLE |
| Ga0211559_1000006019 | F056435 | N/A | MKKFKSIITRIIAVFAASALSVIGAGAIAGIELWKAALMAGIGGMATVVEALARAYMDDGVLDEDEINAAFHKVDKKAASE |
| Ga0211559_1000006060 | F010086 | GAGG | MAICVYCEQTYSDERAEAGYDYCMSEECQIKGLDKSEREFRKEYTPALLHKCNYFWIKKTELKSLNVRSDLL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |