NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10057476

Scaffold Ga0211576_10057476


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10057476 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2207
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020110Metagenome226N
F022313Metagenome215Y
F023484Metagenome210N
F098218Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100574763F098218GAGMTSFSSWSKRPEEMRAAAKARAIAALHQKHSKGLTILERAYLHAIKTGRLDPDD
Ga0211576_100574765F022313GGAMTYHYKPEQEYESTKLERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPQTSYDFFHQ
Ga0211576_100574766F023484N/AMDTEPNPFHPSPNAPMNINTKAGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNSIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS
Ga0211576_100574767F020110N/AMSTQLEVKARLSYARAMLERDIPTNTVATLISSKFFVCRSTAYNDIQAAQAEIDLSDDGPSTLESSEPINTDSVLAMLQHRLEVCVATGDDKAVCSLIKAMNQAKQWNGYRTQSVSPFA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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