NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211576_10045530

Scaffold Ga0211576_10045530


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10045530 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2527
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030088Metagenome186Y
F039588Metagenome163Y
F047679Metagenome149N
F082690Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100455303F039588N/AMEDLKFKTAEQVMKHTNTPDRNADFYTNTNKGFAMAINGFRISVQWGPGNYVDGEIRNSDYDAPMQHSIWGCDTAEVMIWDRNDDPLFNLVPIDHDTNKHDKEKLDANGGHTDQVFGHCNSDCVARIISTLVNCGDENPLRAIAQIYNASFMEA
Ga0211576_100455305F030088N/AMGFKLNIVTKTKMSAKEMSRTLITLNQSEVFKMGRKIYVPFSAVSVVFNSKGATRKFDKDLDSITHPTRGKLFCLPSNVEQFIKVV
Ga0211576_100455306F047679GGAMTNLETSTAPLVADQEGDHYFMVGETVYYLNEFMKTLGDRDFDGVAHITNQGGIGIKVDEANEEVEYTIFTASY
Ga0211576_100455307F082690N/AMSKECVMCGGDAGEYGNNPAPLFNEGVCCDSCNMEVVMTRVMINRVGRNMEQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.