NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10043042

Scaffold Ga0211576_10043042


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10043042 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2611
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076080Metagenome / Metatranscriptome118Y
F078580Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100430422F076080N/AVEINSTFVYVSLILWQIGFIVGILLKLFYKPNEKKFVPTAVKSIPAVEVMTPKVQPGHIDVEMKKKIALHKPTTSSIKSDEVIKGKVSTQKEKLKQLRRG
Ga0211576_100430426F078580N/AMAYRVVMELIPRPDDIEEWVWNEPNSEKANSFGGKAWTGKLSASDTVWEYSTKSAANNKMSSLESADSTNRRYKVIEV

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