NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10026842

Scaffold Ga0211576_10026842


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10026842 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3435
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F007006Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100268423F005315N/AMYIVTCGDSFTKGEGLESTSQAYPYQLQKLLKSDKLTNLSQSGASEYLITAQIEEAVKLKPDLIVVGHTSEYRWQVWDARNNITQGFIVANHVLKNEKYYRNWILSEQILANRRSEDKKHQAAWHAAGMLYYSEEELVHRLWSGAVAKQIILCQRANIPMIHHCCFPHLHPLLKELTEDYIEYHLDLAKHKDFAPDKSHAGARSHLTLAKKIINMVG
Ga0211576_100268425F007006GAGGMEAALKQEVRKEISRIVDLMIQGESIRESIAELKKDIKTEYGLPVATITKVATIVRKNSLEEEEEKWDEIKEWVDACS
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