NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211576_10025584

Scaffold Ga0211576_10025584


Overview

Basic Information
Taxon OID3300020438 Open in IMG/M
Scaffold IDGa0211576_10025584 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3533
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4118Long. (o)-127.7122Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001205Metagenome / Metatranscriptome748Y
F034593Metagenome / Metatranscriptome174Y
F079333Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211576_100255842F079333N/AMPRISRHRDRCRTGHTCTRSAPVLASQRSVFANGKRILVRGDKVKPHTILKTAGGRPRCVTHGAKLTGSSRGVFVQGIGVGRKGDKADRGAMVGASFNVFAG
Ga0211576_100255844F001205AGCAGMFKDVIGDWPTDRRFILTSCDDKYFDQYFPRFYKTYKEHWQLPIHVHIIDPSDITMERVDKLDVTYTHCTTDKSVLKWPYSYETYCQAQRFILLGYNQLENQSVIVADVDSYALRKPNETQTHMLESNMAFTEYNGRMMATFCNFHHSRKTQARQSAIRMQQLLEQTDTIGVDQLVIKETFKPLPYNKLKHEEWIRHFDNRTDIDAKKHKQCLIYHEKGTRGKLKTVETTWIDIE
Ga0211576_100255845F034593GGAGMDRYRVIAKFAKLNNWKQGLELGVWVGVTTFFMMRETDVKMYCVDSWEEQPDNPEYDWQFNKKPRWKNGELTVEEFTNENQAWDHNKNEKHFRD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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