NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211639_10072698

Scaffold Ga0211639_10072698


Overview

Basic Information
Taxon OID3300020435 Open in IMG/M
Scaffold IDGa0211639_10072698 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000586 (ERX556070-ERR599086)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_111
CoordinatesLat. (o)-16.9727Long. (o)-100.6633Alt. (m)Depth (m)350
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007053Metagenome / Metatranscriptome359Y
F009921Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0211639_100726982F009921GAGMSELPDMISALVDDNKIDAESHFKNSMAQKIGSALDLKRVEVANSLIKGQLDTSVEDSADEKV
Ga0211639_100726984F007053AGGAMANSIRNSHQRSVLHIDTTDGAITLAELKATGEATPTKAHIVDIYWQTAGSLTVDRGGTAVHAFTGTGHWNLTQSGCELGGTQTADIGLTVSGNTYAIIVVHKSYELV

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