NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211580_10002126

Scaffold Ga0211580_10002126


Overview

Basic Information
Taxon OID3300020420 Open in IMG/M
Scaffold IDGa0211580_10002126 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10306
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.493Long. (o)-159.0606Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025054Metagenome203Y
F091884Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211580_100021265F091884N/AMATTKSKKSTKKVEYKQQERSVIAFLLVSHGSWVWSIGKDPSIVHATRCVRKAKRDYGIKGWQVIPVNIYDIEDCENWAFDGGTLVDVDKQDKTSEDYLKGRHFNAYRGCPPLKFIETLEVVS
Ga0211580_100021268F025054GGAGGMPRSKTATLFELDCILHRAAKLTDRSFTIFPPSDEEGNLLVDETIEYYKKEIIKTINQIKTESL

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