NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211644_10224342

Scaffold Ga0211644_10224342


Overview

Basic Information
Taxon OID3300020416 Open in IMG/M
Scaffold IDGa0211644_10224342 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.972Long. (o)-84.601Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018076Metagenome / Metatranscriptome237N
F050304Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0211644_102243421F018076N/AFVNQAEIEGLEDTRVFLGITNILTENVMDSRYDLVEQDSDFELTARIIYLGRPRTATTFLGLFRRETSRTEVRVIVELKNKKTGQVVSGNGIGTIDKEISSTGFQINEELPFDRSELGGALKEAIGNAVQEIL
Ga0211644_102243422F050304GAGGMRFKKYYKDILSIVGAILLLGTTIFINKNDVKQLYREFATLTLKVNAQEKEIESLEDKVSTLIVQNQRLLKDLEQHNETRGKENVLLLERLYDLEEKVEILSSKQLVSMTNGKVFNDRFEFEDKQVNRLG
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