Scaffold Ga0211659_10307815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211659_10307815

Scaffold Ga0211659_10307815

Overview

Basic Information
Taxon OID	3300020404 Open in IMG/M
Scaffold ID	Ga0211659_10307815 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	696
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211659_103078151	F004990	GGA	MYGDPKKPCKICGEGADIREGNIYYCCDHYALYVLGKPMSQIEKELNENKI
Ga0211659_103078152	F008915	N/A	CLNTAQRMGFIVDNEITLDLYEMQSAAHLGILRCLESKKHKENWGYSYKGSFNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLRLQVRTQLPKNNNSLIIRPKAKPNELYILIVDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPDKLTPIELLKNGTWN

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