NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211659_10004909

Scaffold Ga0211659_10004909


Overview

Basic Information
Taxon OID3300020404 Open in IMG/M
Scaffold IDGa0211659_10004909 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7024
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006585Metagenome / Metatranscriptome369Y
F013717Metagenome / Metatranscriptome269Y
F027348Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0211659_100049096F013717N/AMIDRTAILGMGGTLATFGLSHLDSLFGCIAGIITIVYMSRKLYQEVKKK
Ga0211659_100049097F027348N/AMRNLEILRDKFLDMSKKAQMLTVFVGLIVGIIILDWLF
Ga0211659_100049099F006585GGAMAQQKLDRKDFQIAVKTGTDANKTKFAKESTQGELYLATDTFKIYVAVTTAGASDSTLKSVALS

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