NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211666_10003770

Scaffold Ga0211666_10003770


Overview

Basic Information
Taxon OID3300020392 Open in IMG/M
Scaffold IDGa0211666_10003770 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8802
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029485Metagenome / Metatranscriptome188Y
F054080Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0211666_1000377015F029485AGGAMDSYWQWNKENFKWHYDPADKTPDVQYVGQYISNPRSLLRDVVNASSDALTTEDEYDEVSIKGKPYNKEAAEIMEGYHNDLTRAGFTPNNTGGRQTWNVHELFKKMGELSGLKQPQIMFLEQPPGKAIPWHRDSYNNYRRNFAKVSDDTEVIRYLVQLNDWQWGHYVSVGNDVIHQYSLGDIHCWREGIYHATGNVGYWPRWSLTITGQVTPDALHLHEPRKIEV
Ga0211666_100037703F054080N/AMIKEALKAVIGVGKRGGPFKITPMRIILFAFLVLLFFLGTVATLLFLTNIILSVK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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