NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211555_10209874

Scaffold Ga0211555_10209874


Overview

Basic Information
Taxon OID3300020390 Open in IMG/M
Scaffold IDGa0211555_10209874 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002049 (ERX555953-ERR598985)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_142
CoordinatesLat. (o)25.6405Long. (o)-88.4085Alt. (m)Depth (m)640
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022673Metagenome213Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211555_102098743F072444N/AMPERENNSFWEIAEIIDREMSILRKMRPVGPKEKALLKKMVEDKEKEHEKRTNSQP
Ga0211555_102098744F022673AGGAMKREQIVSPRVEIAEKIHEELLVSLELERKLLQKELTVQETMTERVVVRKDLQKCERKIKELTEQLQKENDR

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