NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10002833

Scaffold Ga0211652_10002833


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10002833 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5480
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y
F044433Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100028335F004162N/AMTPKKPFNKVEGLFSARREIDKEIQKIQKVCQHPTKSIRSVRERLDSQTMVIRWTCDTCSSVIGIPNNNELQNYLKQ
Ga0211652_100028337F044433N/AMENMNNQGKTPKQYNDSAKFAGYSIIGMVILILFLTLLGGCATTQDTHKECCKSKKTSTK
Ga0211652_100028338F017556N/AMAYSKFKVGQAVTFPSSGKIGDRARKGGTITAIEKMYELKDENKRYYPNGECRGELTTIKELSKGKSKGYAYRCKTIQPNGYIAEIVMVEEYKLKLSTEKEVMNSYTLYR
Ga0211652_100028339F007537N/AMKKLLILLAAGVMFTSCEKDFLDDYNQHQYEPADINYEFKMTGRCTQDANGYYRLPLIPQEDKQTLHRFGAYVTNTDKWGLPTQVTWTCDKFWYTPDTLGFTYIEIGNVPTGESPWSFQNFAVTGYEGLVVTIVNGTSYADPVKDSVYCMIAPIGAMAGDTATVWGKAYFEEGDITIEDEFKIIFE
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