NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10186788

Scaffold Ga0211656_10186788


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10186788 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)627
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001494Metagenome683Y
F028834Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211656_101867881F001494N/AKRKNDPVKDYQKECVDQRVCLFYVADRVKGILEESKTDSQLRSQLEEFNDECIHNIGVNALIEKYEY
Ga0211656_101867882F028834N/AMIEIDIRSENSVYITIGKWVIYIDDSTGEQIIDSWKE

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