NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211683_10023998

Scaffold Ga0211683_10023998


Overview

Basic Information
Taxon OID3300020372 Open in IMG/M
Scaffold IDGa0211683_10023998 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2073
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Chosvirus → Chosvirus KM23C739(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.1363Long. (o)-49.3331Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F004990Metagenome416Y

Sequences

Protein IDFamilyRBSSequence
Ga0211683_100239983F001839AGGAGVKYFEKFDKDLINNRALNSHEKLIYIICKSFEFAPRGCRISHKYLMLRTGIKTVPTLVAALDRLTLFGMLARKQIDNGTCHYVFDKPTMQEYILHNLNKRKKISLSKNKKKKALIKAESYPNVINMIKVIK
Ga0211683_100239984F004990GGAMYEDPKKPCCVCKKGADLNEKGKRYCADHYALHVLGKSMSQIDKELGVKK

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