NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211683_10006665

Scaffold Ga0211683_10006665


Overview

Basic Information
Taxon OID3300020372 Open in IMG/M
Scaffold IDGa0211683_10006665 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4401
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.1363Long. (o)-49.3331Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037816Metagenome167Y
F068513Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0211683_100066652F037816N/ALSLSKLAIFLSLFLFSCSNYLTQDEVIKPENLKCGSSSDVDFYSKNGSFTQDSENFSNKLKRINDNSNKDDFNFIYISNPKNSGGYFLELEKIIKKKNKHQIYFKENKPSQGSANIMALTATYCFLKVYNLDKVEVFIN
Ga0211683_100066654F068513N/AMKINIVLIYYLIEMKTTIIIVITTFALIGSCLGKDFNSKFLFNFKMSGEYELFNSLNLYDIYNYSNKDPLIRTQINLSKEKLKKQDIELLYNFSNHLLNNISILVFNENYKISKKNVLKQCKKILRIERKIGKRKVDLKECRMHIQPYFANWSMYRENESSYEKGVTTQQIIFLYKKKEYVITSGCWEKCDETRSDLFNLVKSIKF
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