NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211690_1000840

Scaffold Ga0211690_1000840


Overview

Basic Information
Taxon OID3300020335 Open in IMG/M
Scaffold IDGa0211690_1000840 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13582
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035779Metagenome / Metatranscriptome171Y
F097394Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0211690_100084010F097394N/AMKLKTLNRFINEGSSDVYDEETRELIFPANEEYTLRQFIKIAKKSTEGKKAYNGSYNFGKGIKLAEYLRKNMPGGLANKMRATVYRNAWNTGGNLEVMIRLKAGDKDIFYFSSANSTRQPRYSFSELFNGTIKPSDPGKPIYKDWGMGIVHGSYQSISNFDEFMEDIVGVFKDFERVNGQPFDLKGAIANEKARKKVVAAWNKLEPKVEKQYDIAKENSRKAHRDIIIRMPYIRSAEKRVYYKTDEPRELRHPDEYGDYAEKVLSSKEYTKYENAQAKISDLIEPFCKKHGYEFVWAADW
Ga0211690_100084011F035779N/ATSGEAINYRLSYQYGKGGFLAMASSSKELDKEIEIDNKQEIGKAIEDSINVELKKRRQLFTVEQDHGYQGAGYSFYFNMDDLIKLLNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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