NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211616_1027246

Scaffold Ga0211616_1027246


Overview

Basic Information
Taxon OID3300020306 Open in IMG/M
Scaffold IDGa0211616_1027246 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046070Metagenome / Metatranscriptome152N
F090610Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211616_10272462F046070AGGAGGMNIKRIVELRDVTHDAQTKMDLISKRIMQGGLSLDQQILHLDNFAANQTRHMLGNEELYKLLKNETI
Ga0211616_10272463F090610N/AMKMHKVWRLYLIDNKSITQISKELNITKSKLKLKYGLK

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