| Basic Information | |
|---|---|
| Taxon OID | 3300020303 Open in IMG/M |
| Scaffold ID | Ga0211692_1009080 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556095-ERR599124) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1443 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_078 | |||||||
| Coordinates | Lat. (o) | -30.3455 | Long. (o) | -43.2924 | Alt. (m) | Depth (m) | 800 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004768 | Metagenome / Metatranscriptome | 424 | Y |
| F008561 | Metagenome / Metatranscriptome | 331 | Y |
| F032811 | Metagenome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211692_10090801 | F008561 | GAG | MKFDELIEHYENAIGFESTVKGVPMSEENLELCKKFVTDIHDCPRQDVRVMYRGPRTSYAHATLRKDARSFDVYHTPRYR |
| Ga0211692_10090802 | F004768 | GAGG | MKTATIEILEEGETIFGSPTNGEFFVRKYEDGEEMGGGFFKTMAEAETCVREYQQLNG |
| Ga0211692_10090804 | F032811 | N/A | MKIAQGCYFEQEEDEPIDPIRGRKTSANIEEPNYRRKSFLEDIPDNYSERIMRLKGTARSVPAPEREVQTPEGFAITIAYNKSGYQVIPKEDLKI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |