NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211621_1000575

Scaffold Ga0211621_1000575


Overview

Basic Information
Taxon OID3300020289 Open in IMG/M
Scaffold IDGa0211621_1000575 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000242 (ERX556122-ERR599019)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9671
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_048
CoordinatesLat. (o)-9.4112Long. (o)66.3281Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003197Metagenome / Metatranscriptome501Y
F014510Metagenome262Y
F051968Metagenome143Y
F099417Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211621_100057515F014510GGAMLNQFIMQLSMCEVLSANFLIQPSMAFNCSQIETFILESYFDNDYNAFIKWWDKTIVPMTEELQSFVNEELESKK
Ga0211621_10005754F003197GGAGMDYKDYLSKLQNDYKYFKDMLKSLEKEKKTPGNGFAKMKCKEKIAELEKIFNEIDYAAQVTYD
Ga0211621_10005755F099417N/AMCKMVYQSDVDKLVKSHIYNWVKPKIWNKDINDVDWKNVKDTVYLDALACKTAWWKNYDHFTKLFDDVKDAFITDADTNVFDNGV
Ga0211621_10005756F051968AGGAGMEKIVNQICDFVAYVDLFYNEKSGLYPIKGMTNSMVINAVKKHIEKVGQEFCADSVDREKIRDIILEDNNLKWGV
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