| Basic Information | |
|---|---|
| Taxon OID | 3300020274 Open in IMG/M |
| Scaffold ID | Ga0211658_1004500 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3603 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_102 | |||||||
| Coordinates | Lat. (o) | -5.254 | Long. (o) | -85.2248 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001419 | Metagenome / Metatranscriptome | 698 | Y |
| F018383 | Metagenome / Metatranscriptome | 235 | Y |
| F096162 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211658_100450013 | F001419 | GGAGG | MNYEEILKCYDGETDIHASTSFEFGLMNELYYRLFYSYPEVDS |
| Ga0211658_10045002 | F096162 | N/A | MINTDLTEDQLIELKVQFVEFKLKEMTTEDLYDYVRAMMLMDVDPDPEILKDEIDAYDDNLYDILVPYVKDEDGSYEELQEFFHDRHANDWIDD |
| Ga0211658_10045005 | F018383 | GGAG | MESITFNNEQLEFLKFIVQDFEYNDDHEKYMINQIENKIYSAQENQSLKLLKGLC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |