NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10527181

Scaffold Ga0211731_10527181


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10527181 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3594
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001424Metagenome / Metatranscriptome698Y
F006063Metagenome / Metatranscriptome382Y
F011843Metagenome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_105271812F006063AGGTGGVLDQSGDESELEGDGQMTDLLTALHLSVMLLDLKIRMMEAINEERFDLAMTYHLLILVRQDELDAHKWAMSPKAWAIYETIHP
Ga0211731_105271813F011843GGAMNISLLTKVRQLFNVDYVPNSTNRHNQRQYIKALRILGDKWLIHPNNEIKRIQ
Ga0211731_105271816F001424AGGAMHRLSTIDEMVEDERVFCHNCANAEMVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKIKGGWATVTWSEHQCSRTGLAAFPTDIKHRCHLFQTKASAVESDWWLT
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