NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10088244

Scaffold Ga0211731_10088244


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10088244 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31689
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (84.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014621Metagenome261N
F038592Metagenome165Y
F049488Metagenome146N
F065535Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1008824415F038592AGGAGGMKNFDSWLCNDPSIDDGQELIDDRANELIKTTYRPSILINDAISEFTFKENQQMAEFASENDMTGLGNYIYLKAYDFANKLANQQAEHEFFNGDLG
Ga0211731_1008824417F065535AGGMTFNEQIDSLLNKQKEVDYILVTETIKEYLVTWPSNVDSQLWNHRLESLLKRIDEKFGKGDNS
Ga0211731_1008824421F049488AGGAMTKGVFFVITMWIVFCGFIIYLTEVSRKEEVFKFNCNNLIGGWHPDIPKKFAELCAEAKKERNDR
Ga0211731_1008824430F014621GAGMTLIHWLMSILFIELIAVFTVAFLAFSGFFTEMRMLSKIGIFVMTMGLMVQVMRSLHYFEYGAYPIDTLFPLWITKDIGASIIIFDLALLHFRKAK
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