NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194115_10325438

Scaffold Ga0194115_10325438


Overview

Basic Information
Taxon OID3300020183 Open in IMG/M
Scaffold IDGa0194115_10325438 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)690
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4446Long. (o)29.9042Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001129Metagenome / Metatranscriptome768Y
F010758Metagenome / Metatranscriptome299N

Sequences

Protein IDFamilyRBSSequence
Ga0194115_103254381F001129AGGCGGMQFIDAAVTGANFDFLVVNSAATLSVLTGTNSENLLTAYSLSGKSVAAGIVISGRNGGKITAVTPSAGSVIGYTFL
Ga0194115_103254382F010758N/AYPLVFADVQSATTDMGSLSLVVGVYFSDRMESIAPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEDWTLSTSVSLTRFVESRDDRTAGWVATLTFLIPYGHNVCEIPT

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