| Basic Information | |
|---|---|
| Taxon OID | 3300020183 Open in IMG/M |
| Scaffold ID | Ga0194115_10008479 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9937 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (9.52%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tanzania: Lake Tanganyika | |||||||
| Coordinates | Lat. (o) | -6.4446 | Long. (o) | 29.9042 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000710 | Metagenome / Metatranscriptome | 925 | Y |
| F002287 | Metagenome / Metatranscriptome | 574 | Y |
| F003659 | Metagenome / Metatranscriptome | 474 | Y |
| F004838 | Metagenome / Metatranscriptome | 421 | Y |
| F010159 | Metagenome / Metatranscriptome | 307 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194115_1000847911 | F010159 | N/A | MSWQIPTEIEKDFKSGKATYRTFQTGVGGQSILPVPANSYVVIFGYDFSPAGGGFKNLESQLGLPDGGPRAILNSTFIRWFETQQIAFYTGNDFYPFIHHVDLKTTVLPSRITNNVPVDGTFNNVTIDQVFEEIDSTPIARQVYITSSNDVTITVGLILDSDVATQNLIPVTNRTPQGLTYGGAPQVVATQTDFGPVITPQQFMQPSPKDYADFAFGLLPANADGQAFATPDSARGLLSPSAYLALLGDVFRDAAAANYFLCLHYALYTETIPEQRG |
| Ga0194115_1000847912 | F000710 | N/A | MAQVNMISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSTTSAAPGTLVNALQLRVTLTINNDVVIDDVVAHELGASVAAGITTGFPAYIPFPRALTGQDTILLRVTNSSGASQLLNVTVYYKNEI |
| Ga0194115_1000847913 | F002287 | N/A | MSQVSKLSFVDGKLGAPTSGQQTTRVLFNTIENPGTTSSLTFFRSFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQFFSSGSLDTFGGFVQQTVSIIVGNQTVVKNLPIQFNQGVAGQAFDRLHENGGTLNQQVNSSATVQNVQPAEIRLLTDIVIPPQVAFEVRIDSNSGVYGSGAVVCALAGYGKIFSAGNSF |
| Ga0194115_1000847914 | F004838 | N/A | MISAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELSGTIFSQASRHANPSVTNINENQFEVNEALLVETVAFYVKDGSGNVVNFQGVYGSQAVIVFDLIIGNKRTIKETPVFAAGSPFTFANTSNQTKPLGGDLLQCFVPRHQVYMEGAGILIPPQIQWYVQYTIFNVITGDIIAPTDATALGCYLFGTKVNLNFNTSI |
| Ga0194115_100084796 | F003659 | N/A | MPTVSANDVIGRYLIALEDVPVYDVPNGTRIGEIKKGNSTAEVFSYVQRPGGQVWWAFDYTIPGQSPSSYYVLHKEGRFRLSRAAGNTIVTPASLPGVDVFPRGADLKKFAIYGGLALAALLLLRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |