Scaffold Ga0181596

Basic Information
Taxon OID	3300020177 Open in IMG/M
Scaffold ID	Ga0181596_10004795 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020177 Open in IMG/M

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12100
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (23.08%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12100

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (23.08%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015588	Metagenome / Metatranscriptome	253	N
F027498	Metagenome / Metatranscriptome	194	N
F030743	Metagenome / Metatranscriptome	184	N
F073188	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181596_1000479510	F015588	AGAAGG	MKLSGKGSMDTLPSDLVHNIFTRACIMEMEEKFPLNYRFYTDHGEIEFSSNDLVVRKDRVVADLSNFVYNHIFTSMRLPILHFEKRIGNKVVYSQHVHLWNDEIIQRHTGKIPKSPLESYMWNMMMLIN
Ga0181596_1000479519	F027498	GGAGG	MFKQGQITNMPTKGDIKRIEGCTDYLEFNGKRWHRFHENGKDAGIGVWAETDEVGSPAPRWFLRPRAWRG
Ga0181596_1000479526	F073188	N/A	VNLNKALHRAKDEIRWSGIKRTKKIEENNIMTAALNIVNNKPVKIRIPRDKRVPSLPAKKRMAMSPLNPPYTEMFNGGPPVVRVPPPRNYDPLTLANELNEVLSVALDPNWKPSTPNNTFDPTAYRPYAPPTPRMPSPVAEMLKNDTMDANQIRNVSKNIVNMKSLPENSTITVNINKLKNFKVNMAPIISNDVELEDLMDELMFTYLALLKLSYIKTRKGKLSKKQAENMEALRRGRDMVRKRIKRRLDKYSIKNVESF
Ga0181596_100047956	F030743	AGTAG	MSSALKIKSKGVTKTRRTPKKPESLSRQFGKLTLSNSPMNVNNNINVNNLIERFKKLSIKKDGPWIVASQHSSLRRDGQLRQSYRYFEGKPFTTSALYAEERVRLDVTAERYKLGKQEKLGDDVILSVSHGRQMLDKRYFTVPSDTIVILMTYPDHLLYASQNWRNFLNPLYTRKGLDELFLGGKLERTLVFNREKIDHVQVDIRIPGDLCENLELQYQDPEKFPHLGLFSLPFQNPRKGGIADFVVTKGNDDWPGNNYMQLNAAKRTLDGLVKNFKGKIIIVNSCREKNEPMSV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181596_10004795

Overview

Ecosystem & Geography

Associated Families

Sequences