NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11415409

Scaffold Ga0211729_11415409


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11415409 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009526Metagenome / Metatranscriptome316N
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_114154091F009746N/AIRGVTLGNLATYRANLAATLAAAGRVVYAYPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITVIVNAADNQAALANLETLILSVTDLLSNNISFLGGWSQPTVQQIGNADMLISQLNIEMVTTN
Ga0211729_114154092F009526AGGMPATYITGRSLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVELYLDDTSSAGIISALWDAASSSPDTSLTFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGSVTRT
Ga0211729_114154093F009265AGGMKYNVTTKQGNNYIVSDENAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEDSPKENSLTDSSE
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