NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11371158

Scaffold Ga0211729_11371158


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11371158 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001897Metagenome / Metatranscriptome620Y
F002433Metagenome / Metatranscriptome559Y
F005503Metagenome / Metatranscriptome398Y
F038208Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_113711582F002433N/AVSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEQRLDQLLLEIALKK
Ga0211729_113711583F005503GGAGMSNEIGLFVLMAIACILWALMSYAIGYKEGHKDGYNRGKAVSRHISAQAVR
Ga0211729_113711584F001897AGGCGGMAFMDNYEGNKDRTDRWIATYPQGRLETLIIEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVIALVKTETPAADYDYWTTKHGDVPSYQTREEAEEVKDTAWEADAAPMCSHGSMRWNQSKPDAPKAWAGYFCSEKIKENQCKPRWYVLTSDGTFKPQV
Ga0211729_113711587F038208N/AMITRADEAQCMVSAIEHCKDRNADHPTRFQKNLSWFEYVAQMAESMAAEWLVARRLGYDYQPGITWDKSKADVGEHIEVKWSANPASNLWIQESDRDDRDIAVLVTGHSPKLHIIGWI
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