NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11010878

Scaffold Ga0211729_11010878


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11010878 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1661
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F011484Metagenome290Y
F042747Metagenome / Metatranscriptome157Y
F048091Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_110108783F006618GAGGMSKIKQHLEKQIVIKGKEHEQTGWKRYIYFEYEGNEYELTLFWDEFNGYETYWRSPDKTPAWVVEWDSEAHNGMSFEHYLDELTYEMEWK
Ga0211729_110108784F042747GAGGVLGYKYEDIQEFGSTLERAELYIPLSDTQVREGLVKIWDFFEGVLAEGYVEGEEVEV
Ga0211729_110108785F048091GAGGMIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWNEEAQEWTNGYIGWNEEKGEGEYLDDDDFIGEQLGAILEVANGANKVI
Ga0211729_110108787F011484GAGGMKELEQFLNVEAEWVLERLSTGTEANDRNYYQGRLDQLAQVRRILGHNQLLIERERK
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