NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10525722

Scaffold Ga0211729_10525722


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10525722 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4560
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026249Metagenome / Metatranscriptome198N
F033774Metagenome176N
F078250Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_105257221F026249N/AMKGKGNEVLVKGGKGKVPVKRPSEYVKKNGPAPKVIADADWSRVLDAASLGLPMERLWALSGMTDKTFNRYLLRYPERKEAIESARTRGEYDLTSTVRSCGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQSE
Ga0211729_105257222F078250GGAGGVILFRCNGFRPVRALGIAEAAEVFARRAARRAFGRRGYVRTLVEDSYVPNLSIVEFAAFIGYSTGRNETTGHNFRFTVVNGGDL
Ga0211729_105257224F033774N/AMGLTLTLSSDLMKETIQRNAFKFSVGRAIFCAIPECGVILDWKRAAEFSACKGEKYVSIKVFCAECADRVRPSIEGKLADLGLRLEVIDGRTLR
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