NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_10298987

Scaffold Ga0211729_10298987


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_10298987 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1422
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003579Metagenome / Metatranscriptome478Y
F005113Metagenome / Metatranscriptome411Y
F013396Metagenome271N
F051893Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0211729_102989872F003579N/AMTIIPIAPYTMGSPASPKVGTQFEVRYINYTSPTAVADCHLLDADGVEIMPVGLVPATAEQCAVWVNDDKFAEVLAVNAGFELPAE
Ga0211729_102989873F005113GGAMTKDEHKSAIVTQLQQQSLNLLVDSLAAALSEIEQLKAAAADKPTP
Ga0211729_102989874F013396N/AVSLKRLLLLALLVLGLVAVLGLALRSERVLTAGLPLRILAKSQQEAQTLAGLGAVAVLGTGSMAPYIASAPKGSDPLSTVMAYVVTVQGATIADVKAGSLCIYIPDWAGRHVMHQAASFADGGWIMTGLGTKSYETTERMTGRNFVGIVSRTYIWP
Ga0211729_102989876F051893N/AMNILDLVGNALGGGALGVILRIGNGFFEEYKAGKDHARKLEEAKTMATIAADAAAWTAFTASQQAATVPSNVAPWCANIITLFRPFITLTLVGVA
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