NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180732_1000426

Scaffold Ga0180732_1000426


Overview

Basic Information
Taxon OID3300020171 Open in IMG/M
Scaffold IDGa0180732_1000426 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37363
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (79.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: Olkiluoto Island
CoordinatesLat. (o)61.2413Long. (o)21.4947Alt. (m)Depth (m)420
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046735Metagenome / Metatranscriptome151Y
F056958Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0180732_10004261F046735AGGAVPQIQGWNYAHMKEARELIEGLFTEQEEKDLDFQQEGTQVKWKVAKEDGEPIPQERDIAVSDGLKGKIAKFLKQLDKEEKLGFEHYTLFSKFVD
Ga0180732_100042617F056958AGGAGMETNILAEEKPKSIKLADGKEYTLPPIDLTTLANIQKTMGFKLRELASKIEDDALEVLRLLTYALLKENHPELTLDGVGHLITLKEIKDLTETISIIMAISS

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