NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1004084

Scaffold Ga0206127_1004084


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1004084 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13053
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.15%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041192Metagenome / Metatranscriptome160Y
F041441Metagenome / Metatranscriptome160Y
F062164Metagenome / Metatranscriptome131Y
F074019Metagenome120N
F087187Metagenome / Metatranscriptome110Y
F097348Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100408412F062164N/AMAGKKGRSGGARPNSGRPSKGEVINIRQILDDNIDVNVVIQKLLERIESGDQRAIELFLKYRAGLPKQEIDLNTTGTIDHNIRLRNLIGFEDEDE
Ga0206127_100408414F074019AGGAMMTPPTIEFLQKCADTTKITEILGKWLDVKPENTELLDIYNSFLRTFVYINNLELRDYGFNRLISEAREGRNRAVLRARKAEEALEIAEAKVKDLEAKLKIFGI
Ga0206127_10040842F097348N/AMSTLDKLYNNREMEKVREDYLRGYMHALADLEGIIDNSEHLGDSNLLEVLYEAIVDREVIRD
Ga0206127_100408422F087187N/AMYTILVVNNNRYLINTMVSDLSQDKACQTILQDYPDDAQIHFETPNKEDLQ
Ga0206127_10040847F041192GAGMECLDYMSWALKGNHLRVYAVPTKSMYTYKKGTKTVNLSYVKLVIEIGNAKHLGKEEYKQHEMHIKVCEIYKYYYDNHKAKI
Ga0206127_10040849F041441N/AMDTKTELLLDYQEMAILALREEVERLTKENELLTYRLTGNDLQFIKNKEL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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