NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10416811

Scaffold Ga0211726_10416811


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10416811 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_104168111F000263N/AMFTDKESLELPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELTDAIAREEETEEAMDSMDRTNAEGRLDTLVELYQLTYQLSFAIGARDEA
Ga0211726_104168112F001781GGAGMKPEDKDKLNECLKILDTTDLGLSMVWLWTWSTINNILDDETYKAKVTQDQMWEHLCEAVEAGHGFSLEYGAEQHQDDVLEWMLNRDYIVDPDMEEEEEDATD
Ga0211726_104168113F000441AGGAGGMQQTDKYINEQLNKAQKLLWSGSLHEQDEAHNIIAKLIKDRMSEQEGTNE
Ga0211726_104168114F001019AGGAGGMSNYEPSLEILEVNYSCSPGGVDTFEVYDKGDNAGIMDIPIYETESLTEAVQYCYNLGKDFTVRTYAEWESRELASL
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