NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10320296

Scaffold Ga0211726_10320296


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10320296 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1898
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_103202963F003182AGGAGMHILLFDCSICSKLYGKPKQRHGLKKGAELTAHEWFAQCMSCGTFGIKIVDDARIGELSQ
Ga0211726_103202964F000903AGGAGGMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMAAEYLVAKRLGYEYTPGITWDKSKADVGNHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVVIAKKPRYRNPSQNNWSVPQINLQPIETLQRSNYAHSIV
Ga0211726_103202965F000403GGAMSDYMEIINPQQMIGRLYFQGEIVEEYKVEQCDKCSQIRKFDAFGYQKGFDSTLNIIWFCGDCR
Ga0211726_103202967F001897N/AAEKRYVLIQAKAWRNQTEVEPAGIDYAYGYFEAYSPKMARWMIEDTSTSALMRVMALVMGGAEKATKEVMELVKSQAPAADYDYWTTKHGDVPSFKDRADAEQAGEPSFGSSEEPSWSIEAKQSCIHGERVWKQSHEGAPKSWAGYFCIERNKETQCKPFWYVLRSSGKWEPQV
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