Scaffold Ga0211726_10161058

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211726_10161058

Scaffold Ga0211726_10161058

Overview

Basic Information
Taxon OID	3300020161 Open in IMG/M
Scaffold ID	Ga0211726_10161058 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	855
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	14 to 20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F021537	Metagenome	218	Y
F024557	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_101610581	F021537	GGAG	MQTREQKLAYLRKTIETLWHGVSDTKTGDYPRIISLYKEVLMHDYHDADSWEN
Ga0211726_101610582	F024557	N/A	MNSQVWIYFSKTGTGYEMSGSDIISGIDAFINMDGTYLVEYSYSDLMSDMHLFIYEWDKSQKKRRTVFESYQKELVLMGMVKNIDKLPFNVQQKILTMYVNDAEELELEKNANS
Ga0211726_101610583	F008552	N/A	EFFSDIKENLTEISKKDTLSFKLDPEEVKLLHGSYENVRRIISLPEVEHNKFTNVFKRKFDTSVFKKFKNVKLHIDKDYFYFTGFYATQKGTNPIEFQSLNFDVRFIESLENKYKSVVN

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