NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10117743

Scaffold Ga0211726_10117743


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10117743 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20418
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001881Metagenome / Metatranscriptome622Y
F008358Metagenome / Metatranscriptome334Y
F013889Metagenome / Metatranscriptome267Y
F066719Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1011774316F066719GGAMVVLFTSTIITCSQAMNIIHRIQRVVGLTEIQKTEIIQEIRKVIPFCPVIVKQNGK
Ga0211726_1011774318F008358N/AMSIPYIYLIIFFCIAYLIFTDQSVARGFYILTQLAKVQYEKVKWWVIHNPANPIVRYFMWRHSMKLAEELMDELAQKDKE
Ga0211726_1011774319F013889GAGGMSRTYRKTEGMHHQALRYPHTFSEIKKLDGVLHEEDLEGLPFSGLNHIKAREHNLPTSWDDKVISAYYEEDFKF
Ga0211726_1011774323F001881GGAMTERAQAFMNVIWEARNSGADTEEKLVAAILSIAAENIQFFTAQDGRIVLDKNDMLQLAQELEQ
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